Basic Information
Locus ID:
Oco06G024120
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 26826467 | 26829305 | - | Oco06G024120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 24,848.92 Da | 46.57 | 64.17 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 10 | 221 | 5.2E-73 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 119 | 211 | 1.96E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 119 | 224 | 1.1E-43 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 125 | 212 | 24.946388 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 83 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G14550.1 | indole-3-acetic acid inducible 14. IAA14 is a member of the Aux/IAA protein family. Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19. | 0 |
| RefSeq | XP_006650567.1 | auxin-responsive protein IAA13 [Oryza brachyantha] | 0 |
| A2XLV9 | Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica OX=39946 GN=IAA13 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1DSM5 | Auxin-responsive protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_031134 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology