Basic Information
Locus ID:
Oco06G023900
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
SMG1
Description:
Belongs to the PI3 PI4-kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 26642996 | 26665523 | + | Oco06G023900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 450,078.50 Da | 45.77 | 93.80 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05170 | PIKKc_SMG1 | 2298 | 2607 | 0.0 | IPR039414 |
| Pfam | PF00400 | WD domain, G-beta repeat | 271 | 309 | 0.002 | IPR001680 |
| Pfam | PF02260 | FATC domain | 4026 | 4055 | 3.6E-13 | IPR003152 |
| Pfam | PF15785 | Serine/threonine-protein kinase smg-1 | 982 | 1461 | 4.6E-41 | IPR031559 |
| Pfam | PF00454 | Phosphatidylinositol 3- and 4-kinase | 2327 | 2606 | 2.2E-49 | IPR000403 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 79 | 389 | 1.83E-42 | IPR036322 |
| SUPERFAMILY | SSF48371 | ARM repeat | 404 | 1042 | 8.96E-9 | IPR016024 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2248 | 2609 | 1.53E-75 | IPR011009 |
| Gene3D | G3DSA:1.10.1070.11 | - | 2467 | 2639 | 1.5E-41 | IPR036940 |
| Gene3D | G3DSA:3.30.1010.10 | - | 2263 | 2385 | 1.3E-22 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 73 | 392 | 6.0E-40 | IPR015943 |
| SMART | SM01343 | FATC_2 | 4024 | 4056 | 3.6E-14 | IPR003152 |
| SMART | SM01345 | Rapamycin_bind_3 | 2121 | 2249 | 0.0023 | - |
| SMART | SM00320 | WD40_4 | 174 | 217 | 5.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 309 | 6.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 313 | 355 | 13.0 | IPR001680 |
| SMART | SM00146 | pi3k_hr1_6 | 2328 | 2672 | 2.2E-46 | IPR000403 |
| SMART | SM00320 | WD40_4 | 124 | 171 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 266 | 0.57 | IPR001680 |
| SMART | SM00320 | WD40_4 | 62 | 103 | 8.7 | IPR001680 |
| ProSiteProfiles | PS50290 | Phosphatidylinositol 3- and 4-kinases family profile. | 2327 | 2600 | 39.294498 | IPR000403 |
| ProSiteProfiles | PS51190 | FATC domain profile. | 4024 | 4056 | 15.689259 | IPR003152 |
| ProSiteProfiles | PS51189 | FAT domain profile. | 1521 | 2088 | 10.193658 | IPR014009 |
| ProSitePatterns | PS00916 | Phosphatidylinositol 3- and 4-kinases signature 2. | 2500 | 2520 | - | IPR018936 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3824 | 3861 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3826 | 3840 | - | - |
| Coils | Coil | Coil | 4056 | 4056 | - | - |
| Coils | Coil | Coil | 3165 | 3185 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21520.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_040377868.1 | serine/threonine-protein kinase SMG1-like [Oryza brachyantha] | 0 |
| C5J7W8 | Serine/threonine-protein kinase SMG1 OS=Danio rerio OX=7955 GN=smg1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0KIT6 | non-specific serine/threonine protein kinase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28717 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26387 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010337 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g218300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12513, Sbi_jg45801 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20163 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022393 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00027, Sgl05097 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000038715 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0016060 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30113580, pistato.v30278720 |
| Apiaceae | Apium graveolens | 1 | Ag7G01278 |
| Arecaceae | Cocos nucifera | 1 | scaffold002237G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707474 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.100.V1.1, AsparagusV1_06.99.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G27127 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G35075.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022517m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29240.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g063090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0024 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0029 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g07740 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0207s00006.v1.0, Dusal.0207s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10850 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.71 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00007563, Pov_00029448, Pov_00029449 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17189 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.811, CH01.823, Contig309.156 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0340780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062025 |
| Poaceae | Oryza coarctata | 1 | Oco06G023900 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g52794.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G087800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105996, Pt_Chr0107073, Pt_Chr0107513, Pt_Chr0108215 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G005770, Chr12G031570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G111900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG038710-17776, gene_TRIDC4AG038710-72141 ... |
| Poaceae | Triticum aestivum | 1 | TraesCS4B02G069200.1 |
| Poaceae | Zea mays | 1 | Zm00001eb056540_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15011, nbis-gene-15012 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g519 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG08.1867 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2146 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5955 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16929 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3390 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.180 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017325 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4741 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14076 |
| Salicaceae | Populus euphratica | 2 | populus_peu08945, populus_peu37687 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599114 |
| Solanaceae | Solanum chilense | 1 | SOLCI002767800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002510 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17751 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1083 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30820.v3.1 |