Basic Information
Locus ID:
Oco06G022580
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 25285802 | 25289731 | - | Oco06G022580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 34,740.75 Da | 51.81 | 88.61 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 38 | 97 | 6.3E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 20 | 110 | 2.04E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 32 | 104 | 2.2E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 36 | 105 | 4.4E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 35 | 109 | 10.274912 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_015628529.1 | binding partner of ACD11 1 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DC95 | RRM domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_001464 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology