Basic Information
Locus ID:
Oco06G022470
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 25187395 | 25190028 | + | Oco06G022470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 59,203.47 Da | 60.75 | 72.28 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 258 | 282 | 7.9E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 302 | 325 | 1.5E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 296 | 328 | 1.41E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 251 | 283 | 5.49E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 294 | 331 | 1.7E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 332 | 365 | 4.8E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 249 | 286 | 2.9E-13 | - |
| SMART | SM00547 | zf_4 | 337 | 361 | 0.052 | IPR001876 |
| SMART | SM00547 | zf_4 | 304 | 328 | 2.1E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 260 | 284 | 3.3E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 302 | 331 | 9.359745 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 335 | 364 | 9.201654 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 258 | 287 | 10.025985 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 339 | 358 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 262 | 281 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 306 | 325 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 62 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_006650491.1 | uncharacterized protein LOC102712975 [Oryza brachyantha] | 0 |
| TrEMBL | J3LS52 | Zinc finger protein VAR3, chloroplastic OS=Oryza brachyantha OX=4533 GN=102712975 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology