Basic Information
Locus ID:
Oco06G022260
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 25015607 | 25019871 | + | Oco06G022260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 56,623.18 Da | 55.97 | 63.04 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 341 | 367 | 5.0E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 374 | 396 | 1.0E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 300 | 328 | 1.4E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 335 | 368 | 1.83E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 295 | 329 | 6.91E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 331 | 369 | 2.1E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 370 | 402 | 1.0E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 292 | 330 | 1.4E-12 | - |
| SMART | SM00547 | zf_4 | 302 | 326 | 1.4E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 341 | 365 | 6.2E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 374 | 398 | 8.7E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 339 | 368 | 10.071154 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 372 | 401 | 9.325869 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 300 | 329 | 9.653342 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 343 | 362 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 376 | 395 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 304 | 323 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 493 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_040378128.1 | zinc finger protein VAR3, chloroplastic-like [Oryza brachyantha] | 0 |
| TrEMBL | A0A6G1DCR0 | Zinc finger protein VAR3, chloroplastic OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_001416 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology