Basic Information
Locus ID:
Oco06G021320
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
CPK30
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 23973046 | 23977488 | + | Oco06G021320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 64,479.98 Da | 37.79 | 80.80 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 101 | 359 | 6.6949E-122 | - |
| CDD | cd00051 | EFh | 408 | 466 | 2.29967E-16 | IPR002048 |
| CDD | cd00051 | EFh | 479 | 541 | 4.46409E-16 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 102 | 360 | 1.7E-68 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 406 | 467 | 6.6E-11 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 478 | 541 | 4.7E-12 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 98 | 361 | 1.62E-83 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 388 | 573 | 8.42E-44 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 104 | 187 | 1.2E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 369 | 543 | 9.9E-52 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 188 | 368 | 2.1E-58 | - |
| SMART | SM00054 | efh_1 | 479 | 507 | 0.0086 | IPR002048 |
| SMART | SM00054 | efh_1 | 515 | 543 | 1.8E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 407 | 435 | 4.8E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 443 | 471 | 0.077 | IPR002048 |
| SMART | SM00220 | serkin_6 | 102 | 360 | 2.0E-92 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 475 | 510 | 12.644413 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 102 | 360 | 47.155983 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 511 | 546 | 12.7281 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 403 | 438 | 15.406057 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 439 | 474 | 10.245409 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 524 | 536 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 488 | 500 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 108 | 131 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 416 | 428 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 222 | 234 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 452 | 464 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18890.1 | calcium-dependent protein kinase 1. encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. | 0 |
| RefSeq | XP_040377649.1 | calcium-dependent protein kinase 9 [Oryza brachyantha] | 0 |
| Q6AVI8 | Calcium-dependent protein kinase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1DR72 | Calcium-dependent protein kinase 30 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_033702 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology