Basic Information
Locus ID:
Oco06G020920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 23512216 | 23514110 | + | Oco06G020920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 24,818.69 Da | 38.81 | 68.35 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 22 | 66 | 2.79029E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 23 | 69 | 1.8E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 77 | 2.02E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 80 | 8.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 24 | 64 | 7.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 24 | 65 | 13.300693 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 39 | 48 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 110 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015628209.1 | E3 ubiquitin-protein ligase RNF5 [Oryza sativa Japonica Group] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DB47 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_001204 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology