Basic Information
Locus ID:
Oco06G020580
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
NPR1/NIM1 like defence protein C terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 22993252 | 22997214 | - | Oco06G020580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 65,838.09 Da | 53.86 | 88.23 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18310 | BTB_POZ_NPR_plant | 32 | 192 | 1.85694E-61 | - |
| Pfam | PF12313 | NPR1/NIM1 like defence protein C terminal | 370 | 576 | 1.9E-77 | IPR021094 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 298 | 343 | 4.5E-7 | - |
| Pfam | PF11900 | Domain of unknown function (DUF3420) | 227 | 271 | 4.8E-10 | IPR024228 |
| SUPERFAMILY | SSF54695 | POZ domain | 49 | 190 | 6.98E-8 | IPR011333 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 269 | 371 | 2.8E-15 | IPR036770 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 26 | 224 | 3.8E-14 | IPR011333 |
| Gene3D | G3DSA:1.25.40.20 | - | 263 | 402 | 1.5E-16 | IPR036770 |
| SMART | SM00248 | ANK_2a | 294 | 324 | 550.0 | IPR002110 |
| SMART | SM00225 | BTB_4 | 51 | 192 | 0.0055 | IPR000210 |
| SMART | SM00248 | ANK_2a | 328 | 357 | 0.013 | IPR002110 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 51 | 139 | 12.846567 | IPR000210 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 328 | 360 | 9.88487 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 328 | 355 | 9.383383 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 568 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19660.1 | NPR1-like protein 4. Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways. | 0 |
| RefSeq | XP_040378286.1 | BTB/POZ domain and ankyrin repeat-containing protein NPR3 [Oryza brachyantha] | 0 |
| Q75HA6 | BTB/POZ domain and ankyrin repeat-containing protein NPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=NPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DCA3 | BTB domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_001272 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg20876, jg24099, jg32913, jg37460 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9359 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015177 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24590, Sbi_jg8451 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28716 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014746 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41783, Sgl46585 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011052, gene:ENSEOMG00000034168 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0014830, CQ.Regalona.r1.8BG0016030 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30013180, pistato.v30078240, pistato.v30108090 ... |
| Apiaceae | Apium graveolens | 4 | Ag10G01441, Ag6G01202, Ag7G01075, Ag9G02479 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G001470, COCNU_03G015070, COCNU_06G018980 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103702021, gene-LOC103705401, gene-LOC103719294 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2375.V1.1, AsparagusV1_07.3159.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G10356, Ftri18G17771, Ftri1G03889, Ftri8G26191 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G64280.1, AT4G19660.1, AT4G26120.1, AT5G45110.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000824m.g.v1.0, Thhalv10023365m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g00470.v2.2, Sp2g09920.v2.2, Sp7g18230.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB02g062170.2N, BniB03g012550.2N, BniB04g012090.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq02G1445, Ceq02G2177, Ceq06G0842 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G1490, Cgl02G2254, Cgl06G0867 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g11640, gene.Cymno06g03730, gene.Cymno13g03260 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate02g24240, gene.Thate02g24260, gene.Thate04g03600 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4692, nbisL1-mrna-5499 |
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG04.2266, evm.TU.LG07.1255, evm.TU.LG12.195 ... |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002953, Pov_00031763, Pov_00038621 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14534 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.1393, AH02.314, AH02.3395, BH01.1258, BH02.342 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0013110, gene-QOZ80_1AG0034640 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0236240.1, HORVU.MOREX.r3.3HG0291620.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_050132, gene-QYE76_055455, gene-QYE76_063196 |
| Poaceae | Oryza coarctata | 6 | Oco01G004120, Oco01G021250, Oco02G004140, Oco02G021840 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g09800.1, LOC_Os01g56200.1, LOC_Os03g46440.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G132500, gene-BS78_03G030700 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0205292, Pt_Chr0602092, Pt_Chr0602113, Pt_Chr0602542 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G008640, Chr02G008560, Chr02G021010, Chr03G006430 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G515200, Tel3E01G183200, Tel3E01G183400 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC3AG012960, gene_TRIDC3AG044830 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G105400.1, TraesCS3A02G298800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb065420_P002, Zm00001eb121040_P001 ... |
| Poaceae | Zoysia japonica | 7 | nbis-gene-11812, nbis-gene-13337, nbis-gene-20590 ... |
| Poaceae | Zoysia macrostachya | 6 | Zma_g11226, Zma_g3112, Zma_g7805, Zma_g792, Zma_g794 ... |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1529, evm.TU.LG07.1191 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g21400, gene.Posoc10g09380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.1823, evm.TU.Scaffold_4_RagTag.1825 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25755 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4245 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4615 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1031 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000920 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14853, nbisL1-mrna-14854 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1122, nbisL1-mrna-1123 |
| Salicaceae | Populus euphratica | 5 | populus_peu11921, populus_peu15006, populus_peu29049 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616465, gene-LOC132620290, gene-LOC132621418 |
| Solanaceae | Solanum chilense | 1 | SOLCI001298000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011476, gene-LOC107026249, gene-LOC107026404 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6528 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1776 |
| Zosteraceae | Zostera marina | 2 | Zosma03g24130.v3.1, Zosma06g12380.v3.1 |