Basic Information
Locus ID:
Oco06G020340
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 22608769 | 22614442 | - | Oco06G020340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 74,120.74 Da | 54.98 | 61.29 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 262 | 303 | 3.95351E-13 | - |
| Pfam | PF08783 | DWNN domain | 4 | 82 | 1.7E-21 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 172 | 192 | 6.6E-9 | IPR025829 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 328 | 1.38E-10 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 171 | 218 | 6.51E-8 | IPR036875 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 86 | 5.5E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 339 | 3.8E-11 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 197 | 248 | 4.5E-10 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 168 | 196 | 2.2E-7 | - |
| SMART | SM00343 | c2hcfinal6 | 176 | 192 | 0.029 | IPR001878 |
| SMART | SM01180 | DWNN_2 | 4 | 83 | 9.2E-36 | IPR014891 |
| SMART | SM00343 | c2hcfinal6 | 202 | 218 | 0.11 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 203 | 217 | 8.581337 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 83 | 17.296093 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 177 | 192 | 9.092303 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 449 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 0 |
| RefSeq | XP_006651657.1 | E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like [Oryza brachyantha] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | J3LRB6 | DWNN domain-containing protein OS=Oryza brachyantha OX=4533 GN=102708789 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology