Basic Information
Locus ID:
Oco06G019310
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 21263741 | 21265627 | - | Oco06G019310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 25,988.65 Da | 57.80 | 64.32 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 9 | 239 | 7.8E-73 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 135 | 233 | 7.46E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 130 | 241 | 4.0E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 135 | 234 | 24.373377 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 112 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_052147050.1 | auxin-responsive protein IAA11 [Oryza glaberrima] | 0 |
| Q75GK0 | Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1EE71 | Auxin-responsive protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_029132 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology