halophFGD

Basic Information

Locus ID: Oco06G019200

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG06	21084118	21101619	-	Oco06G019200

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.65	51,400.05 Da	28.83	117.09	0.75

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd13132	MATE_eukaryotic	11	444	6.22092E-149	IPR045069
Pfam	PF01554	MatE	21	181	6.4E-30	IPR002528
Pfam	PF01554	MatE	242	403	5.1E-28	IPR002528
TIGRFAM	TIGR00797	matE: MATE efflux family protein	21	417	8.2E-71	IPR002528

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport) GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)

Molecular Function:

GO:0015297 (antiporter activity) GO:0042910 (xenobiotic transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K03327 (MATE family, multidrug and toxin extrusion protein)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G26590.1	MATE efflux family protein.
RefSeq	XP_006650317.1	protein DETOXIFICATION 33 [Oryza brachyantha]
Swiss-Prot	Q38956	Protein DETOXIFICATION 29 OS=Arabidopsis thaliana OX=3702 GN=DTX29 PE=1 SV=1
TrEMBL	A0A6G1EBR9	Protein DETOXIFICATION OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_029119 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	11	jg11925, jg13962, jg13963, jg2273, jg2274, jg28739, jg35308 ... jg7019, jg9496, jg9497, jg9498
Aizoaceae	Mesembryanthemum crystallinum	5	gene_21617, gene_21618, gene_3235, gene_3604, gene_758
Amaranthaceae	Atriplex hortensis	9	Ah010292, Ah013648, Ah013649, Ah018833, Ah019332, Ah019333 ... Ah019335, Ah022977, Ah036998
Amaranthaceae	Beta vulgaris	6	BVRB_1g004390, BVRB_1g013330, BVRB_3g053620, BVRB_3g053630 ... BVRB_6g148220, BVRB_9g204060
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg12485, Sbi_jg38426, Sbi_jg39499, Sbi_jg42849 ... Sbi_jg4531, Sbi_jg4532, Sbi_jg45471, Sbi_jg45830, Sbi_jg49431, Sbi_jg54837, Sbi_jg6538
Amaranthaceae	Salicornia europaea	5	Seu_jg11325, Seu_jg14832, Seu_jg15382, Seu_jg20189 ... Seu_jg5942
Amaranthaceae	Suaeda aralocaspica	8	GOSA_00000467, GOSA_00002480, GOSA_00002481, GOSA_00006477 ... GOSA_00021753, GOSA_00022410, GOSA_00026084, GOSA_00026085
Amaranthaceae	Suaeda glauca	25	Sgl00012, Sgl00013, Sgl01932, Sgl04342, Sgl04808, Sgl05079 ... Sgl05080, Sgl05081, Sgl07088, Sgl09411, Sgl09857, Sgl11049, Sgl12870, Sgl16458, Sgl18112, Sgl35210, Sgl35211, Sgl35243, Sgl35266, Sgl40596, Sgl40597, Sgl40625, Sgl40648, Sgl51137, Sgl56442
Amaranthaceae	Chenopodium album	20	gene:ENSEOMG00000000577, gene:ENSEOMG00000000781 ... gene:ENSEOMG00000001772, gene:ENSEOMG00000013398, gene:ENSEOMG00000013768, gene:ENSEOMG00000014015, gene:ENSEOMG00000027788, gene:ENSEOMG00000030676, gene:ENSEOMG00000030931, gene:ENSEOMG00000031641, gene:ENSEOMG00000032993, gene:ENSEOMG00000035790, gene:ENSEOMG00000043368, gene:ENSEOMG00000043562, gene:ENSEOMG00000043870, gene:ENSEOMG00000046464, gene:ENSEOMG00000047551, gene:ENSEOMG00000047622, gene:ENSEOMG00000049938, gene:ENSEOMG00000052857
Amaranthaceae	Chenopodium quinoa	15	CQ.Regalona.r1.1AG0019880, CQ.Regalona.r1.1BG0005180 ... CQ.Regalona.r1.2BG0025090, CQ.Regalona.r1.3AG0009450, CQ.Regalona.r1.3AG0009520, CQ.Regalona.r1.3AG0009530, CQ.Regalona.r1.3BG0003500, CQ.Regalona.r1.3BG0009690, CQ.Regalona.r1.3BG0009700, CQ.Regalona.r1.5AG0003610, CQ.Regalona.r1.5BG0003880, CQ.Regalona.r1.6AG0004650, CQ.Regalona.r1.6BG0004750, CQ.Regalona.r1.6BG0004870, CQ.Regalona.r1.7BG0008070
Anacardiaceae	Pistacia vera	6	pistato.v30046030, pistato.v30113770, pistato.v30183250 ... pistato.v30183320, pistato.v30221770, pistato.v30221790
Apiaceae	Apium graveolens	7	Ag1G01278, Ag1G01279, Ag1G01280, Ag1G01281, Ag4G01718 ... Ag6G01584, Ag8G02232
Arecaceae	Cocos nucifera	5	COCNU_08G009000, COCNU_08G009010, COCNU_09G008380 ... COCNU_11G001200, COCNU_14G010100
Arecaceae	Phoenix dactylifera	8	gene-LOC103698240, gene-LOC103705478, gene-LOC103711853 ... gene-LOC103712296, gene-LOC103720781, gene-LOC103724117, gene-LOC113461431, gene-LOC120107500
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.1695.V1.1, AsparagusV1_07.1872.V1.1 ... AsparagusV1_07.3117.V1.1, AsparagusV1_08.332.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G05360, Ftri10G19367, Ftri10G24365, Ftri10G27123 ... Ftri13G30759, Ftri9G08507
Brassicaceae	Arabidopsis thaliana	7	AT1G12950.1, AT1G23300.1, AT1G47530.1, AT3G26590.1 ... AT4G00350.1, AT4G25640.2, AT5G38030.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10005286m.g.v1.0, Thhalv10007376m.g.v1.0 ... Thhalv10009930m.g.v1.0, Thhalv10011435m.g.v1.0, Thhalv10011437m.g.v1.0, Thhalv10025035m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g11520.v2.2, Sp1g20740.v2.2, Sp1g34550.v2.2 ... Sp2g15700.v2.2, Sp6g00420.v2.2, Sp7g23670.v2.2
Brassicaceae	Brassica nigra	8	BniB02g007800.2N, BniB02g066880.2N, BniB02g082050.2N ... BniB03g005460.2N, BniB03g012710.2N, BniB04g063450.2N, BniB05g011690.2N, BniB08g042570.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq02G0955, Ceq03G1655, Ceq07G1358, Ceq07G1359, Ceq07G1360 ... Ceq07G1361, Ceq09G1468
Casuarinaceae	Casuarina glauca	7	Cgl02G0985, Cgl03G1776, Cgl07G1439, Cgl07G1441, Cgl07G1442 ... Cgl07G1443, Cgl09G1561
Cymodoceaceae	Cymodocea nodosa	6	gene.Cymno01g15000, gene.Cymno06g08130, gene.Cymno08g00760 ... gene.Cymno08g00770, gene.Cymno08g00780, gene.Cymno08g00800
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g00110, gene.Thate08g16060, gene.Thate08g16090 ... gene.Thate08g19160
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.2766, evm.TU.LG03.597, evm.TU.LG03.599 ... evm.TU.LG03.600, evm.TU.LG04.847, evm.TU.LG06.526
Plantaginaceae	Plantago ovata	12	Pov_00001471, Pov_00005379, Pov_00010391, Pov_00010406 ... Pov_00010416, Pov_00022323, Pov_00025717, Pov_00026792, Pov_00032977, Pov_00034006, Pov_00034275, Pov_00035642
Plumbaginaceae	Limonium bicolor	7	Lb1G06810, Lb1G07678, Lb2G11092, Lb3G21084, Lb4G24107 ... Lb6G29894, Lb7G34851
Poaceae	Echinochloa crus-galli	20	AH01.1194, AH01.1652, AH02.3385, AH07.3983, AH08.2323 ... AH08.2411, AH08.65, BH01.1852, BH02.3586, BH07.3797, BH08.16, BH08.2465, CH01.1455, CH01.1950, CH02.3117, CH04.2201, CH07.3856, CH08.180, CH08.2660, CH08.2755
Poaceae	Eleusine coracana subsp. coracana	17	gene-QOZ80_1AG0034480, gene-QOZ80_1BG0084500 ... gene-QOZ80_1BG0084660, gene-QOZ80_2AG0122680, gene-QOZ80_2AG0150900, gene-QOZ80_2BG0178040, gene-QOZ80_2BG0206320, gene-QOZ80_3AG0225830, gene-QOZ80_3BG0270630, gene-QOZ80_6AG0541520, gene-QOZ80_6AG0541570, gene-QOZ80_6BG0494800, gene-QOZ80_8AG0640200, gene-QOZ80_8AG0641230, gene-QOZ80_8BG0668810, gene-QOZ80_8BG0669700, gene-QOZ80_UnG0727790
Poaceae	Hordeum vulgare	9	HORVU.MOREX.r3.2HG0208100.1, HORVU.MOREX.r3.3HG0231600.1 ... HORVU.MOREX.r3.3HG0291400.1, HORVU.MOREX.r3.4HG0341050.1, HORVU.MOREX.r3.6HG0630650.1.CDS1, HORVU.MOREX.r3.6HG0630660.1, HORVU.MOREX.r3.7HG0678310.1, HORVU.MOREX.r3.7HG0687760.1, HORVU.MOREX.r3.7HG0738350.1
Poaceae	Lolium multiflorum	14	gene-QYE76_011117, gene-QYE76_017996, gene-QYE76_026375 ... gene-QYE76_026396, gene-QYE76_026397, gene-QYE76_026399, gene-QYE76_026400, gene-QYE76_026402, gene-QYE76_026403, gene-QYE76_026418, gene-QYE76_030817, gene-QYE76_055477, gene-QYE76_055481, gene-QYE76_062963
Poaceae	Oryza coarctata	9	Oco04G008550, Oco04G026120, Oco05G018440, Oco06G019200 ... Oco15G014240, Oco16G013450, Oco16G014110, Oco19G001700, Oco20G001880
Poaceae	Oryza sativa	7	LOC_Os01g56050.1, LOC_Os02g57570.1, LOC_Os02g57580.1 ... LOC_Os03g42830.1, LOC_Os08g43654.1, LOC_Os08g44870.1, LOC_Os10g11860.1
Poaceae	Paspalum vaginatum	11	gene-BS78_01G149900, gene-BS78_01G265000, gene-BS78_K293900 ... gene-BS78_02G161300, gene-BS78_02G161400, gene-BS78_07G221700, gene-BS78_07G230500, gene-BS78_07G230600, gene-BS78_10G225100, gene-BS78_10G225200, gene-BS78_K294000
Poaceae	Puccinellia tenuiflora	16	Pt_Chr0101086, Pt_Chr0101195, Pt_Chr0104432, Pt_Chr0108186 ... Pt_Chr0306147, Pt_Chr0403438, Pt_Chr0403591, Pt_Chr0405464, Pt_Chr0405468, Pt_Chr0500011, Pt_Chr0501263, Pt_Chr0602079, Pt_Chr0604522, Pt_Chr0604523, Pt_Chr0605602, Pt_Chr0605603
Poaceae	Sporobolus alterniflorus	9	Chr01G009880, Chr03G016980, Chr08G016970, Chr12G027070 ... Chr15G000480, Chr16G011430, Chr17G010550, Chr20G003620, Chr24G008640
Poaceae	Thinopyrum elongatum	10	Tel3E01G071700, Tel3E01G487000, Tel4E01G112900 ... Tel4E01G113000, Tel6E01G728400, Tel7E01G254700, Tel7E01G255000, Tel7E01G427500, Tel7E01G474800, Tel7E01G817200
Poaceae	Triticum dicoccoides	24	gene_TRIDC2AG074840, gene_TRIDC2BG081890 ... gene_TRIDC2BG088600, gene_TRIDC3AG005050, gene_TRIDC3AG044610, gene_TRIDC3AG069850, gene_TRIDC3AG071780, gene_TRIDC3BG005390, gene_TRIDC3BG050490, gene_TRIDC4AG038570, gene_TRIDC4BG010770, gene_TRIDC6AG058820, gene_TRIDC6AG058830, gene_TRIDC6BG069590, gene_TRIDC6BG069600, gene_TRIDC7AG015490, gene_TRIDC7AG015510, gene_TRIDC7AG030840, gene_TRIDC7AG035840, gene_TRIDC7AG067140, gene_TRIDC7BG004880, gene_TRIDC7BG021730, gene_TRIDC7BG027070, gene_TRIDC7BG061000
Poaceae	Triticum aestivum	38	TraesCS2A02G534900.1, TraesCS2B02G612900.1 ... TraesCS3A02G044500.1, TraesCS3A02G300400.1, TraesCS3B02G039300.1, TraesCS3B02G336100.1, TraesCS3D02G036400.1, TraesCS3D02G301400.1, TraesCS4A02G245300.1, TraesCS4A02G245400.1, TraesCS4B02G070000.1, TraesCS4B02G070100.1, TraesCS4D02G068800.1, TraesCS4D02G068900.1, TraesCS6A02G400100.1.cds1, TraesCS6A02G400200.1, TraesCS6B02G440300.1.cds1, TraesCS6B02G440400.1, TraesCS6D02G384300.1.cds1, TraesCS6D02G384400.1, TraesCS7A02G131500.2, TraesCS7A02G131600.1, TraesCS7A02G241600.1, TraesCS7A02G272800.1, TraesCS7A02G482100.1, TraesCS7B02G032100.1, TraesCS7B02G032300.1, TraesCS7B02G137200.1, TraesCS7B02G170800.1, TraesCS7B02G384300.1, TraesCS7D02G014200.1, TraesCS7D02G130700.1, TraesCS7D02G130800.1, TraesCS7D02G240600.1, TraesCS7D02G272900.1, TraesCS7D02G384100.1, TraesCS7D02G469000.1, TraesCSU02G150400.1
Poaceae	Zea mays	6	Zm00001eb026090_P001, Zm00001eb051160_P001 ... Zm00001eb175810_P002, Zm00001eb191100_P001, Zm00001eb202870_P001, Zm00001eb370200_P002
Poaceae	Zoysia japonica	6	nbis-gene-11827, nbis-gene-17681, nbis-gene-20385 ... nbis-gene-42831, nbis-gene-42893, nbis-gene-8280
Poaceae	Zoysia macrostachya	6	Zma_g14737, Zma_g23403, Zma_g24550, Zma_g3236, Zma_g5009 ... Zma_g8730
Portulacaceae	Portulaca oleracea	20	evm.TU.LG01.1423, evm.TU.LG01.782, evm.TU.LG01.903 ... evm.TU.LG04.2252, evm.TU.LG04.3557, evm.TU.LG04.5, evm.TU.LG06.1872, evm.TU.LG06.53, evm.TU.LG08.1811, evm.TU.LG08.1821, evm.TU.LG08.1823, evm.TU.LG08.1824, evm.TU.LG11.1656, evm.TU.LG11.1657, evm.TU.LG14.707, evm.TU.LG14.709, evm.TU.LG16.21, evm.TU.LG16.22, evm.TU.LG22.38, evm.TU.LG23.113
Posidoniaceae	Posidonia oceanica	7	gene.Posoc03g12010, gene.Posoc05g02420, gene.Posoc05g02430 ... gene.Posoc05g02450, gene.Posoc05g02470, gene.Posoc06g08870, gene.Posoc06g10080
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_11_RagTag.1422, evm.TU.Scaffold_4_RagTag.99 ... evm.TU.Scaffold_15_RagTag.778, evm.TU.Scaffold_15_RagTag.782, evm.TU.Scaffold_7_RagTag.535, evm.TU.Scaffold_9_RagTag.523
Rhizophoraceae	Carallia pectinifolia	13	nbisL1-mrna-12710, nbisL1-mrna-12711, nbisL1-mrna-12712 ... nbisL1-mrna-19092, nbisL1-mrna-19093, nbisL1-mrna-19094, nbisL1-mrna-21641, nbisL1-mrna-26967, nbisL1-mrna-27157, nbisL1-mrna-28479, nbisL1-mrna-29239, nbisL1-mrna-29241, nbisL1-mrna-5977
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-10392, nbisL1-mrna-10964, nbisL1-mrna-16915 ... nbisL1-mrna-2679, nbisL1-mrna-5524, nbisL1-mrna-7532
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-2179, nbisL1-mrna-21864, nbisL1-mrna-22430 ... nbisL1-mrna-3373
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000001l.422, evm.TU.utg000002l.536 ... evm.TU.utg000003l.255, evm.TU.utg000008l.61, evm.TU.utg000010l.394
Rhizophoraceae	Kandelia obovata	4	Maker00001204, Maker00002486, Maker00009076, Maker00012028
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-1098, nbisL1-mrna-11238, nbisL1-mrna-1754 ... nbisL1-mrna-2340, nbisL1-mrna-5843
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-12468, nbisL1-mrna-17734, nbisL1-mrna-19624 ... nbisL1-mrna-20566, nbisL1-mrna-6299
Salicaceae	Populus euphratica	6	populus_peu07718, populus_peu19114, populus_peu29316 ... populus_peu30678, populus_peu31647, populus_peu31928
Solanaceae	Lycium barbarum	16	gene-LOC132599138, gene-LOC132599141, gene-LOC132606555 ... gene-LOC132616618, gene-LOC132621964, gene-LOC132630553, gene-LOC132631952, gene-LOC132631954, gene-LOC132631955, gene-LOC132636013, gene-LOC132638570, gene-LOC132639384, gene-LOC132641133, gene-LOC132641336, gene-LOC132642607, gene-LOC132645559
Solanaceae	Solanum chilense	14	SOLCI000658700, SOLCI001074600, SOLCI003002000 ... SOLCI003002100, SOLCI004210100, SOLCI004210200, SOLCI004210300, SOLCI004210400, SOLCI004210500, SOLCI005420500, SOLCI005603800, SOLCI006128600, SOLCI006464900, SOLCI006465000
Solanaceae	Solanum pennellii	18	gene-LOC107005319, gene-LOC107008337, gene-LOC107012175 ... gene-LOC107012790, gene-LOC107012989, gene-LOC107013098, gene-LOC107013772, gene-LOC107013966, gene-LOC107015148, gene-LOC107018448, gene-LOC107018638, gene-LOC107020701, gene-LOC107021165, gene-LOC107024634, gene-LOC107025481, gene-LOC107028240, gene-LOC107032704, gene-LOC114077849
Tamaricaceae	Reaumuria soongarica	7	STRG.9123_chr03_-, gene_10806, gene_1927, gene_3542 ... gene_777, gene_7811, gene_7812
Tamaricaceae	Tamarix chinensis	9	TC03G2229, TC04G2313, TC08G1585, TC09G1200, TC10G0521 ... TC10G0522, TC11G0870, TC11G0871, TC11G0874
Zosteraceae	Zostera marina	1	Zosma02g10100.v3.1