Basic Information
Locus ID:
Oco06G019190
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 21051466 | 21054493 | + | Oco06G019190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 39,651.30 Da | 53.73 | 78.61 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 136 | 165 | 2.2E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 197 | 9.64E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 201 | 1.4E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 136 | 179 | 9.45016 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 374 | - | - |
| Coils | Coil | Coil | 269 | 289 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16090.3 | - | 0 |
| RefSeq | XP_015630156.1 | probable E3 ubiquitin-protein ligase ARI1 [Oryza sativa Japonica Group] | 0 |
| Q84RR2 | Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana OX=3702 GN=ARI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0GQP8 | RBR-type E3 ubiquitin transferase OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0341130.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062978 |
| Poaceae | Oryza coarctata | 1 | Oco06G019190 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0101864, Pt_Chr0104424, Pt_Chr0704377, Pt_Ctg00135 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G052000, Tel4E01G113900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG038460, gene_TRIDC4AG038470 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G244200.1, TraesCS4B02G070800.1 ... |