Basic Information
Locus ID:
Oco06G017520
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
WRKY4
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 17132229 | 17141695 | + | Oco06G017520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 50,046.12 Da | 66.78 | 54.64 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 363 | 419 | 3.2E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 197 | 253 | 4.1E-24 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 194 | 255 | 7.98E-25 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 354 | 422 | 3.53E-29 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 347 | 423 | 4.4E-35 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 182 | 256 | 1.1E-26 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 362 | 421 | 1.0E-38 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 196 | 254 | 3.7E-32 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 197 | 255 | 23.020283 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 357 | 422 | 37.171917 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 349 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_052146685.1 | probable WRKY transcription factor 4 isoform X1 [Oryza glaberrima] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0D3FKA4 | WRKY domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology