Basic Information
Locus ID:
Oco06G015860
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 14832568 | 14838639 | - | Oco06G015860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 57,133.10 Da | 41.07 | 87.83 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 127 | 186 | 3.0E-10 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 78 | 6.3E-6 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 417 | 520 | 9.83E-14 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 37 | 257 | 7.78E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 269 | 1.1E-47 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 397 | 510 | 1.1E-17 | - |
| SMART | SM00369 | LRR_typ_2 | 103 | 132 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 173 | 196 | 4.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 150 | 172 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 197 | 219 | 180.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 435 | 534 | 10.0401 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 152 | 173 | 7.203709 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 441 | 464 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 173 | 186 | 4.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 106 | 119 | 4.2E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 301 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_006650171.1 | protein STRUBBELIG-RECEPTOR FAMILY 7 [Oryza brachyantha] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | J3LPJ3 | Protein kinase domain-containing protein OS=Oryza brachyantha OX=4533 GN=102714544 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology