Basic Information
Locus ID:
Oco06G013660
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DWNN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 12369575 | 12371064 | + | Oco06G013660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 45,417.52 Da | 49.98 | 58.42 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 205 | 246 | 1.23911E-11 | - |
| Pfam | PF13696 | Zinc knuckle | 153 | 173 | 3.7E-9 | IPR025829 |
| Pfam | PF08783 | DWNN domain | 3 | 70 | 7.6E-11 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 197 | 265 | 6.48E-8 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 149 | 208 | 3.2E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 74 | 2.1E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 209 | 276 | 3.5E-8 | IPR013083 |
| SMART | SM01180 | DWNN_2 | 3 | 72 | 9.3E-18 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 3 | 72 | 10.228117 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 114 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 0 |
| RefSeq | XP_006651347.2 | E3 ubiquitin ligase PQT3-like [Oryza brachyantha] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DMI9 | DWNN domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_023788 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology