Basic Information
Locus ID:
Oco06G013590
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DWNN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 12328178 | 12329436 | - | Oco06G013590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 38,441.75 Da | 55.65 | 60.00 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 156 | 192 | 2.49528E-9 | - |
| Pfam | PF13696 | Zinc knuckle | 117 | 137 | 5.6E-8 | IPR025829 |
| Pfam | PF08783 | DWNN domain | 3 | 62 | 1.1E-7 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 226 | 3.53E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 233 | 7.4E-11 | IPR013083 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 66 | 1.1E-7 | - |
| SMART | SM01180 | DWNN_2 | 3 | 64 | 9.6E-16 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 306 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 0 |
| RefSeq | XP_015629724.2 | LOW QUALITY PROTEIN: E3 ubiquitin ligase PQT3-like [Oryza sativa Japonica Group] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DMI9 | DWNN domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_023788 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology