Basic Information
Locus ID:
Oco06G013390
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 12148940 | 12155113 | + | Oco06G013390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 54,336.29 Da | 39.94 | 79.55 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 175 | 470 | 5.58628E-91 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 444 | 470 | 0.078 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 211 | 6.4E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 258 | 295 | 3.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 218 | 253 | 2.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 337 | 2.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 168 | 470 | 2.11E-75 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 160 | 493 | 1.1E-118 | IPR015943 |
| SMART | SM00320 | WD40_4 | 256 | 295 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 378 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 337 | 4.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 470 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 172 | 211 | 1.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 381 | 420 | 0.049 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 253 | 4.7E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 389 | 429 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 304 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 305 | 346 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 221 | 258 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 221 | 262 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 179 | 220 | 16.323217 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 305 | 338 | 11.471045 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 179 | 215 | 12.815584 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 298 | 11.101955 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 282 | 296 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 324 | 338 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 282 | 296 | 1.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 324 | 338 | 1.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 198 | 212 | 1.4E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15900.1 | pleiotropic regulatory locus 1. Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Essential for plant innate immunity. Interacts with MOS4 and AtCDC5. It is also predicted to have two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase, and may affect the stability of AKIN10. | 0 |
| RefSeq | XP_015631891.1 | protein pleiotropic regulatory locus 1 [Oryza sativa Japonica Group] | 0 |
| Q42384 | Protein pleiotropic regulatory locus 1 OS=Arabidopsis thaliana OX=3702 GN=PRL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DLD4 | WD_REPEATS_REGION domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_023741 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1912 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18792 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah002099, Ah033823 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g164380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg35628, Sbi_jg974 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3756 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023450 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl68926 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005707, gene:ENSEOMG00000037008 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0014140, CQ.Regalona.r1.7BG0015800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234300 |
| Apiaceae | Apium graveolens | 2 | Ag6G00181, Ag7G01606 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G010210 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698165, gene-LOC103703613 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.954.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G31554 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G16650.1, AT4G15900.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022263m.g.v1.0, Thhalv10025068m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g14940.v2.2, Sp7g14350.v2.2, SpUn1161_0010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g073630.2N, BniB05g020390.2N, BniB05g055790.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1130 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1227 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17390 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2647s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g04110 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3028, nbisL1-mrna-5079 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1295 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00028059, Pov_00028060, Pov_00031986 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33999 |
| Poaceae | Echinochloa crus-galli | 4 | AH09.193, BH01.2015, CH01.2103, Contig328.73 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0326650, gene-QOZ80_4BG0358680 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0253650.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_006901, gene-QYE76_052157 |
| Poaceae | Oryza coarctata | 4 | Oco05G013080, Oco06G013390, Oco17G009500, Oco18G009510 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g21990.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G027300, gene-BS78_K285100 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0604039, Pt_Chr0605301, Pt_Chr0700506, Pt_Chr0700560 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G031990, Chr05G009980, Chr10G020650, Chr11G001990 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G306400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG024390, gene_TRIDC3BG028110 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G175600.2, TraesCS3B02G205300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb051300_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32015, nbis-gene-40598 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20885, Zma_g33273 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.493, evm.TU.LG21.187 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g32250 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.588, evm.TU.Scaffold_6_RagTag.595 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16093 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15888 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-490 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.344 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007774 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12195, nbisL1-mrna-13734 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3646 |
| Salicaceae | Populus euphratica | 3 | populus_peu08061, populus_peu22219, populus_peu22229 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132612705, gene-LOC132633620, gene-LOC132633622 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI004130400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008122, gene-LOC114073927 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2951 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1074 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25650.v3.1 |