Basic Information
Locus ID:
Oco06G013320
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 12080870 | 12081372 | - | Oco06G013320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 17,061.48 Da | 66.69 | 85.86 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 94 | 133 | 4.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 93 | 138 | 6.56E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 142 | 4.8E-16 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 94 | 133 | 10.069786 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_040378612.1 | E3 ubiquitin-protein ligase Os04g0590900-like [Oryza brachyantha] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1DNF8 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_023734 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology