Basic Information
Locus ID:
Oco06G012950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 11689476 | 11695681 | + | Oco06G012950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 30,215.53 Da | 46.14 | 55.42 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 196 | 253 | 1.3E-16 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 20 | 94 | 1.9E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 147 | 191 | 1.6E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 148 | 199 | 1.22E-11 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 85 | 141 | 3.66E-18 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 17 | 84 | 2.35E-17 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 221 | 259 | 1.8E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 216 | 1.1E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 149 | 191 | 3.8E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 13 | 82 | 25.826199 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 149 | 192 | 11.722122 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 84 | 148 | 32.552853 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_015628865.1 | E3 ubiquitin-protein ligase SRFP1-like [Oryza sativa Japonica Group] | 0 |
| Q10LI1 | E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DM85 | RING finger and CHY zinc finger domain-containing protein 1 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_023256 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology