Basic Information
Locus ID:
Oco06G010950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 9867446 | 9870104 | - | Oco06G010950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 64,852.20 Da | 30.42 | 89.97 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 208 | 3.9387E-91 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 406 | 588 | 2.3529E-87 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 242 | 350 | 6.0E-18 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 451 | 575 | 5.8E-13 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 45 | 214 | 1.2E-36 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 223 | 1.21E-44 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 230 | 384 | 1.89E-30 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 406 | 600 | 3.22E-38 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 41 | 217 | 5.7E-61 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 231 | 393 | 9.3E-40 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 400 | 587 | 3.6E-54 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 39 | 600 | 6.5E-209 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_052148654.1 | pyruvate decarboxylase 2 [Oryza glaberrima] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1FGN0 | pyruvate decarboxylase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_037445 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology