Basic Information
Locus ID:
Oco06G009920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 8983089 | 8988663 | + | Oco06G009920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 77,582.12 Da | 49.91 | 94.63 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 289 | 331 | 9.74079E-28 | - |
| Pfam | PF04564 | U-box domain | 285 | 355 | 6.4E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 410 | 449 | 1.1E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 493 | 531 | 4.0E-8 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 280 | 360 | 4.8E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 383 | 656 | 5.04E-50 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 285 | 358 | 3.1E-32 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 366 | 557 | 2.8E-38 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 42 | 155 | 3.8E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 558 | 678 | 5.1E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 288 | 351 | 1.9E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 574 | 614 | 61.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 451 | 491 | 13.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 618 | 658 | 180.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 410 | 450 | 4.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 533 | 573 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 368 | 408 | 96.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 492 | 532 | 0.0019 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 284 | 358 | 45.866722 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 421 | 463 | 12.1974 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_052148833.1 | protein spotted leaf 11-like [Oryza glaberrima] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1F7G7 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_012116 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology