Basic Information
Locus ID:
Oco06G009770
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Protein of unknown function (DUF1117)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 8805897 | 8807459 | + | Oco06G009770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 29,555.92 Da | 70.18 | 62.77 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 135 | 176 | 8.19068E-22 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 192 | 275 | 4.5E-28 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 7 | 36 | 8.1E-12 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 134 | 176 | 8.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 131 | 182 | 6.13E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 182 | 1.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 135 | 175 | 8.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 176 | 12.474524 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_006649835.2 | E3 ubiquitin-protein ligase RDUF2-like [Oryza brachyantha] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1F7C4 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_012094 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology