Basic Information
Locus ID:
Oco06G009480
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 8589072 | 8594653 | + | Oco06G009480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 42,685.08 Da | 43.23 | 67.74 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07607 | BAR_SH3P_plant | 46 | 254 | 6.28481E-123 | - |
| Pfam | PF14604 | Variant SH3 domain | 320 | 368 | 6.2E-11 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 44 | 255 | 6.11E-22 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 317 | 372 | 8.66E-16 | IPR036028 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 299 | 376 | 6.6E-16 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 40 | 274 | 2.2E-12 | IPR027267 |
| SMART | SM00326 | SH3_2 | 316 | 371 | 7.9E-13 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 313 | 372 | 20.213524 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 311 | - | - |
| Coils | Coil | Coil | 190 | 210 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_015627859.1 | SH3 domain-containing protein 2 [Oryza sativa Japonica Group] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | Q10NK5 | Os03g0266700 protein OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g16000 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology