Basic Information
Locus ID:
Oco06G008600
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
NTMC2T4.2
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 7780635 | 7783767 | - | Oco06G008600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 53,977.21 Da | 28.69 | 106.45 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 259 | 350 | 1.75903E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 236 | 4.7E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 257 | 350 | 1.9E-21 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 255 | 386 | 1.16E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 252 | 417 | 2.7E-30 | IPR035892 |
| SMART | SM00239 | C2_3c | 258 | 356 | 1.3E-19 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 248 | 16.906471 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 240 | 359 | 21.535854 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 299 | 312 | 2.7E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 274 | 286 | 2.7E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 321 | 329 | 2.7E-5 | IPR000008 |
| Coils | Coil | Coil | 392 | 412 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_015689834.2 | calcium-dependent lipid-binding protein-like [Oryza brachyantha] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DDS3 | Synaptotagmin-5 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_003034 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology