Basic Information
Locus ID:
Oco06G008010
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 7285228 | 7286709 | - | Oco06G008010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 46,435.76 Da | 40.02 | 105.94 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 36 | 77 | 3.85778E-21 | - |
| Pfam | PF04564 | U-box domain | 32 | 103 | 5.1E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 106 | 3.49E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 199 | 411 | 8.86E-17 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 209 | 432 | 3.7E-14 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 104 | 3.2E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 35 | 98 | 1.0E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 31 | 105 | 38.117886 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_015690611.2 | U-box domain-containing protein 21-like [Oryza brachyantha] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1DLN2 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_022189 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology