Basic Information
Locus ID:
Oco06G007390
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 6605730 | 6609452 | - | Oco06G007390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 106,386.54 Da | 35.89 | 102.75 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 35 | 74 | 5.9E-4 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 275 | 296 | 0.33 | IPR001611 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 128 | 168 | 2.0E-6 | IPR025875 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 680 | 953 | 2.5E-41 | IPR001245 |
| SUPERFAMILY | SSF52047 | RNI-like | 67 | 314 | 4.24E-54 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 675 | 953 | 3.64E-71 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 241 | 584 | 1.26E-62 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 195 | 345 | 2.5E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 194 | 1.9E-42 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 646 | 758 | 2.8E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 759 | 969 | 9.7E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 346 | 611 | 6.4E-73 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 199 | 224 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 151 | 174 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 296 | 320 | 63.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 248 | 272 | 57.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 538 | 562 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 127 | 150 | 54.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 102 | 126 | 29.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 679 | 930 | 2.8E-28 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 466 | 490 | 84.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 679 | 956 | 36.117329 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 803 | 815 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 685 | 707 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 1001 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 985 | 1001 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 970 | 984 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65700.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM1 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. | 0 |
| RefSeq | XP_040377985.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Oryza brachyantha] | 0 |
| O49545 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KAV5 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology