Basic Information
Locus ID:
Oco06G006040
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 5333819 | 5339347 | + | Oco06G006040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 66,495.66 Da | 30.70 | 88.33 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 27 | 117 | 9.6E-6 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 210 | 458 | 3.1E-87 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 24 | 116 | 1.02E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 20 | 119 | 6.6E-13 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 96 | 9.45472 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 210 | 482 | 88.493645 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 584 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_015691259.1 | BTB/POZ domain-containing protein NPY4 [Oryza brachyantha] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | J3LL64 | BTB/POZ domain-containing protein NPY4 OS=Oryza brachyantha OX=4533 GN=102712063 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology