Basic Information
Locus ID:
Oco06G003960
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 3438928 | 3443853 | + | Oco06G003960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 57,313.36 Da | 75.67 | 77.80 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 236 | 278 | 1.33839E-21 | - |
| CDD | cd02123 | PA_C_RZF_like | 17 | 165 | 8.72858E-55 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 235 | 278 | 5.2E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 59 | 144 | 3.0E-9 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 224 | 290 | 4.18E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 83 | 128 | 3.14E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 283 | 3.6E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 27 | 158 | 6.0E-27 | - |
| SMART | SM00184 | ring_2 | 236 | 277 | 1.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 236 | 278 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 329 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_052149379.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Oryza glaberrima] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | J3LKD4 | RING-type domain-containing protein OS=Oryza brachyantha OX=4533 GN=102720862 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology