halophFGD

Basic Information

Locus ID: Oco06G003180

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: WD40 repeats

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG06	2764340	2765145	-	Oco06G003180

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.66	6,844.80 Da	40.49	98.87	0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	2	31	2.29E-5	IPR036322
Gene3D	G3DSA:2.130.10.10	-	1	54	1.9E-5	IPR015943
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	1	29	9.372231	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14962 (COMPASS component SWD2)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G66240.3	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_015645026.1	protein ANTHESIS POMOTING FACTOR 1 [Oryza sativa Japonica Group]
Swiss-Prot	Q9LYK6	Protein ANTHESIS POMOTING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=APRF1 PE=2 SV=1
TrEMBL	B9FY69	Putative WD repeat protein OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1174_G05.3 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG06.1037, evm.TU.LG09.461
Poaceae	Oryza coarctata	1	Oco06G003180