Basic Information
Locus ID:
Oco06G002870
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 2500699 | 2503419 | - | Oco06G002870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 64,271.72 Da | 50.55 | 95.38 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 46 | 80 | 3.5E-4 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 228 | 448 | 2.67E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 44 | 89 | 6.54E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 29 | 85 | 2.3E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 213 | 470 | 7.3E-8 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 44 | 91 | 9.312009 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29830.2 | - | 0 |
| RefSeq | XP_003557657.1 | uncharacterized protein LOC100837110 [Brachypodium distachyon] | 0 |
| TrEMBL | A0A0N7KGL7 | Os03g0157000 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0157000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH01.175, BH03.1193, BH03.3926, BH03.3928, BH05.3403 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0211990, gene-QOZ80_3AG0212950 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0517850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061269 |
| Poaceae | Oryza coarctata | 2 | Oco06G002870, Oco06G003350 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G249800, Tel5E01G674400 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC5AG024010, gene_TRIDC5AG055580 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS5A02G142800.1, TraesCS5A02G380200.1 ... |