Basic Information
Locus ID:
Oco06G002780
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 2382864 | 2386177 | + | Oco06G002780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 32,356.68 Da | 59.04 | 68.46 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 145 | 188 | 2.6E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 10 | 91 | 3.6E-16 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 7 | 80 | 3.92E-17 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 144 | 191 | 4.42E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 82 | 139 | 1.57E-18 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 212 | 9.0E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 146 | 188 | 7.0E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 81 | 145 | 33.62442 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 188 | 11.66311 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 3 | 79 | 24.603516 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.2 | - | 0 |
| RefSeq | XP_006649394.1 | E3 ubiquitin-protein ligase RZFP34-like [Oryza brachyantha] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0K8Q6 | CHY-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology