Basic Information
Locus ID:
Oco06G002760
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 2375726 | 2376994 | - | Oco06G002760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 45,742.23 Da | 40.65 | 75.02 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 319 | 5.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 124 | 157 | 0.0068 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 248 | 280 | 0.0015 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 122 | 413 | 7.78E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 109 | 245 | 2.6E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 246 | 420 | 3.9E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 283 | 320 | 2.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 243 | 280 | 6.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 373 | 410 | 110.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 26 | 50 | 0.0018 | IPR000571 |
| SMART | SM00320 | WD40_4 | 198 | 236 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 370 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 118 | 157 | 0.0026 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 250 | 289 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 25 | 51 | 11.722857 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 250 | 283 | 10.284687 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 125 | 157 | 10.100143 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 290 | 320 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 125 | 166 | 13.282162 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 267 | 281 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 307 | 321 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 144 | 158 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 267 | 281 | 1.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 102 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_006651037.1 | zinc finger CCCH domain-containing protein 48-like [Oryza brachyantha] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | J3LJY7 | C3H1-type domain-containing protein OS=Oryza brachyantha OX=4533 GN=102708510 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology