halophFGD

Basic Information

Locus ID: Oco06G002540

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: VWA domain containing CoxE-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG06	2216456	2220666	+	Oco06G002540

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.40	76,619.82 Da	57.43	81.95	-0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16448	RING-H2	79	122	1.85955E-10	-
CDD	cd01466	vWA_C3HC4_type	250	419	7.95774E-56	-
Pfam	PF00092	von Willebrand factor type A domain	251	430	2.2E-23	IPR002035
Pfam	PF17123	RING-like zinc finger	79	107	1.7E-9	IPR001841
Pfam	PF14624	VWA / Hh protein intein-like	595	667	1.3E-20	IPR032838
SUPERFAMILY	SSF53300	vWA-like	247	433	5.15E-33	IPR036465
SUPERFAMILY	SSF57850	RING/U-box	73	128	3.61E-14	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	55	129	8.9E-12	IPR013083
Gene3D	G3DSA:3.40.50.410	von Willebrand factor, type A domain	251	434	3.1E-43	IPR036465
SMART	SM00327	VWA_4	249	430	4.1E-26	IPR002035
SMART	SM00184	ring_2	79	121	1.6E-6	IPR001841
ProSiteProfiles	PS50234	VWFA domain profile.	251	433	16.029108	IPR002035
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	79	122	11.412309	IPR001841

Best hit

Source	Best Hit ID	Description
TAIR	AT5G60710.1	Zinc finger (C3HC4-type RING finger) family protein.
RefSeq	XP_040377531.1	E3 ubiquitin-protein ligase WAV3-like [Oryza brachyantha]
Swiss-Prot	Q9LTA6	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1
TrEMBL	A0A0E0K8M7	Zinc finger (C3HC4-type RING finger) family protein OS=Oryza punctata OX=4537 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg14516, jg14561, jg2770, jg35901, jg8245
Aizoaceae	Mesembryanthemum crystallinum	4	gene_24999, gene_25000, gene_25660, gene_25661
Amaranthaceae	Atriplex hortensis	2	Ah026926, Ah037922
Amaranthaceae	Beta vulgaris	2	BVRB_6g131240, BVRB_9g205260
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg20013, Sbi_jg20014, Sbi_jg2611, Sbi_jg44439 ... Sbi_jg60079
Amaranthaceae	Salicornia europaea	2	Seu_jg17551, Seu_jg24263
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00021664
Amaranthaceae	Suaeda glauca	10	Sgl33389, Sgl33421, Sgl33422, Sgl33423, Sgl38741, Sgl38789 ... Sgl38790, Sgl38791, Sgl78492, Sgl80988
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000001389, gene:ENSEOMG00000018099 ... gene:ENSEOMG00000038216, gene:ENSEOMG00000052236
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.6AG0020680, CQ.Regalona.r1.6BG0021740 ... CQ.Regalona.r1.9AG0004460, CQ.Regalona.r1.9BG0017780
Anacardiaceae	Pistacia vera	4	pistato.v30058400, pistato.v30079680, pistato.v30107870 ... pistato.v30170910
Apiaceae	Apium graveolens	6	Ag10G00607, Ag2G00707, Ag2G00975, Ag4G00356, Ag7G01026 ... AgUnG00206
Arecaceae	Cocos nucifera	5	COCNU_02G018500, COCNU_07G009050, COCNU_08G012040 ... COCNU_09G010220, COCNU_10G007010
Arecaceae	Phoenix dactylifera	6	gene-LOC103702886, gene-LOC103718263, gene-LOC103719880 ... gene-LOC103722149, gene-LOC103722371, gene-LOC120107316
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.59.V1.1, AsparagusV1_10.1949.V1.1
Asteraceae	Flaveria trinervia	4	Ftri17G15907, Ftri17G26128, Ftri1G05625, Ftri6G09532
Brassicaceae	Arabidopsis thaliana	4	AT1G08050.1, AT2G38970.1, AT3G54780.1, AT5G60710.1
Brassicaceae	Schrenkiella parvula	4	Sp1g06680.v2.2, Sp1g06690.v2.2, Sp4g21340.v2.2 ... Sp6g22280.v2.2
Brassicaceae	Brassica nigra	8	BniB02g040560.2N, BniB03g002570.2N, BniB05g041000.2N ... BniB05g041030.2N, BniB05g046850.2N, BniB06g005650.2N, BniB06g042580.2N, BniB08g025040.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1684
Casuarinaceae	Casuarina glauca	1	Cgl02G0618
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g07460, gene.Cymno03g06200
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g05550, gene.Thate01g05570, gene.Thate08g24770
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-4143, nbisL1-mrna-545, nbisL1-mrna-5776
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1040, evm.TU.LG09.889
Plantaginaceae	Plantago ovata	6	Pov_00012673, Pov_00014589, Pov_00040248, Pov_00040251 ... Pov_00040253, Pov_00040315
Plumbaginaceae	Limonium bicolor	6	Lb2G08462, Lb2G14991, Lb4G24348, Lb5G27111, Lb5G27628 ... Lb6G31874
Poaceae	Echinochloa crus-galli	30	AH01.1834, AH01.1837, AH01.1838, AH01.1839, AH01.5264 ... AH02.3893, AH07.2634, AH07.3886, AH09.1514, BH01.2151, BH01.2152, BH01.2154, BH01.2362, BH01.2363, BH01.4947, BH01.4948, BH02.3916, BH07.2446, BH07.3681, BH07.4222, BH08.900, CH01.2247, CH01.2249, CH01.2450, CH01.5552, CH01.5553, CH04.2157, CH07.2519, CH08.214, CH09.1836
Poaceae	Eleusine coracana subsp. coracana	21	gene-QOZ80_1AG0010250, gene-QOZ80_1AG0040130 ... gene-QOZ80_1AG0040140, gene-QOZ80_1BG0090160, gene-QOZ80_1BG0090180, gene-QOZ80_2AG0127070, gene-QOZ80_2AG0127080, gene-QOZ80_2AG0127090, gene-QOZ80_2AG0127120, gene-QOZ80_2AG0137720, gene-QOZ80_2AG0149740, gene-QOZ80_2BG0182620, gene-QOZ80_2BG0182640, gene-QOZ80_2BG0193320, gene-QOZ80_2BG0204480, gene-QOZ80_3AG0233300, gene-QOZ80_3AG0233310, gene-QOZ80_3BG0294640, gene-QOZ80_3BG0294660, gene-QOZ80_4AG0311200, gene-QOZ80_4BG0342370
Poaceae	Hordeum vulgare	11	HORVU.MOREX.r3.1HG0040880.1.CDS1 ... HORVU.MOREX.r3.1HG0092900.1.CDS1, HORVU.MOREX.r3.2HG0179790.1, HORVU.MOREX.r3.2HG0180680.1, HORVU.MOREX.r3.2HG0195800.1, HORVU.MOREX.r3.4HG0412090.1, HORVU.MOREX.r3.4HG0412120.1, HORVU.MOREX.r3.4HG0412140.1.CDS1, HORVU.MOREX.r3.5HG0493950.1.CDS1, HORVU.MOREX.r3.6HG0595330.1, HORVU.MOREX.r3.6HG0627480.1
Poaceae	Lolium multiflorum	23	gene-QYE76_002065, gene-QYE76_011399, gene-QYE76_011400 ... gene-QYE76_016326, gene-QYE76_016712, gene-QYE76_023682, gene-QYE76_023697, gene-QYE76_026777, gene-QYE76_037662, gene-QYE76_039180, gene-QYE76_044975, gene-QYE76_048023, gene-QYE76_048024, gene-QYE76_048025, gene-QYE76_049838, gene-QYE76_049847, gene-QYE76_049934, gene-QYE76_061031, gene-QYE76_067153, gene-QYE76_067176, gene-QYE76_070876, gene-QYE76_070878, gene-QYE76_071798
Poaceae	Oryza coarctata	14	Oco03G015510, Oco03G024760, Oco04G016150, Oco04G025290 ... Oco05G002590, Oco06G002540, Oco07G010360, Oco08G010140, Oco15G001070, Oco16G001210, Oco19G005580, Oco19G005590, Oco20G005500, Oco20G005510
Poaceae	Oryza sativa	14	ChrSy.fgenesh.mRNA.71, LOC_Os02g40664.1, LOC_Os02g56280.1 ... LOC_Os03g04890.1, LOC_Os04g19700.1, LOC_Os04g42980.1, LOC_Os08g03260.1, LOC_Os08g03270.1, LOC_Os10g32740.1, LOC_Os10g32750.1, LOC_Os10g32760.1, LOC_Os11g07750.1, LOC_Os11g11610.1, LOC_Os12g10250.1
Poaceae	Paspalum vaginatum	10	gene-BS78_01G211700, gene-BS78_01G211800 ... gene-BS78_01G212000, gene-BS78_01G485200, gene-BS78_01G485300, gene-BS78_04G199800, gene-BS78_04G312900, gene-BS78_06G109800, gene-BS78_06G154800, gene-BS78_07G027800
Poaceae	Puccinellia tenuiflora	20	Pt_Chr0100122, Pt_Chr0100123, Pt_Chr0100233, Pt_Chr0100234 ... Pt_Chr0100710, Pt_Chr0100802, Pt_Chr0100949, Pt_Chr0104144, Pt_Chr0105810, Pt_Chr0204191, Pt_Chr0204690, Pt_Chr0205317, Pt_Chr0206093, Pt_Chr0206106, Pt_Chr0302158, Pt_Chr0302201, Pt_Chr0305016, Pt_Chr0306954, Pt_Chr0502526, Pt_Chr0703715
Poaceae	Sporobolus alterniflorus	20	Chr01G025620, Chr03G020260, Chr04G004720, Chr04G004730 ... Chr06G000080, Chr06G007410, Chr06G013260, Chr06G021930, Chr09G010470, Chr09G016970, Chr0G008960, Chr0G012620, Chr0G012770, Chr0G033060, Chr13G001310, Chr15G001260, Chr15G009040, Chr23G009090, Chr26G010540, Chr30G010290
Poaceae	Thinopyrum elongatum	17	Tel1E01G008600, Tel1E01G275600, Tel1E01G699700 ... Tel1E01G712800, Tel2E01G627200, Tel2E01G634300, Tel2E01G825900, Tel3E01G624500, Tel4E01G564500, Tel4E01G564600, Tel4E01G587600, Tel5E01G026000, Tel5E01G453800, Tel5E01G536900, Tel6E01G432400, Tel6E01G679200, Tel7E01G715100
Poaceae	Triticum dicoccoides	27	gene_TRIDC1AG022270, gene_TRIDC1AG061970 ... gene_TRIDC1AG062020, gene_TRIDC1BG027030, gene_TRIDC1BG071080, gene_TRIDC2AG051950, gene_TRIDC2AG052740-15160, gene_TRIDC2AG052740-37541, gene_TRIDC2AG065360, gene_TRIDC2BG055280, gene_TRIDC2BG055790, gene_TRIDC2BG069970, gene_TRIDC2BG074300, gene_TRIDC4BG057940, gene_TRIDC4BG057950, gene_TRIDC4BG059910, gene_TRIDC5AG042780, gene_TRIDC5AG052510, gene_TRIDC5AG073170, gene_TRIDC5AG073190, gene_TRIDC5BG046560, gene_TRIDC6AG034840, gene_TRIDC6AG055990, gene_TRIDC6BG041510, gene_TRIDC7AG058920, gene_TRIDC7BG051690, gene_TRIDC7BG051810
Poaceae	Triticum aestivum	37	TraesCS1A02G421500.1, TraesCS1B02G164800.1.cds1 ... TraesCS1B02G456800.1.cds1, TraesCS1D02G144900.1.cds1, TraesCS1D02G433500.1, TraesCS2A02G358400.2, TraesCS2A02G364100.2, TraesCS2B02G377900.1, TraesCS2B02G382300.1, TraesCS2B02G515000.1, TraesCS2D02G357400.1, TraesCS2D02G361900.1, TraesCS2D02G459400.1, TraesCS3A02G393700.1, TraesCS3B02G425600.1.cds1, TraesCS4B02G344100.1, TraesCS4B02G344200.1, TraesCS4B02G358100.1.cds1, TraesCS4D02G339200.1, TraesCS4D02G339300.1, TraesCS4D02G351600.1, TraesCS5A02G284900.1.cds1, TraesCS5A02G359200.1.cds1, TraesCS5A02G512800.2, TraesCS5A02G513000.1, TraesCS5A02G513100.1.cds1, TraesCS5B02G284200.1, TraesCS5B02G338500.1, TraesCS5D02G348200.1.cds1, TraesCS5D02G472700.1.cds1, TraesCS6A02G227300.1, TraesCS6A02G375500.1, TraesCS6B02G254400.1, TraesCS6B02G413100.1, TraesCS6D02G207700.2, TraesCS6D02G360000.1, TraesCS7A02G423300.1
Poaceae	Zea mays	12	Zm00001eb003450_P001, Zm00001eb003460_P002 ... Zm00001eb046280_P001, Zm00001eb046300_P001, Zm00001eb111700_P001, Zm00001eb184920_P001, Zm00001eb191920_P002, Zm00001eb222260_P001, Zm00001eb247390_P001, Zm00001eb258330_P002, Zm00001eb335240_P001, Zm00001eb426300_P001
Poaceae	Zoysia japonica	11	nbis-gene-18518, nbis-gene-19263, nbis-gene-19264 ... nbis-gene-2937, nbis-gene-31635, nbis-gene-39861, nbis-gene-4540, nbis-gene-4542, nbis-gene-5234, nbis-gene-8377, nbis-gene-9464
Poaceae	Zoysia macrostachya	11	Zma_g11552, Zma_g13910, Zma_g14662, Zma_g16157, Zma_g16158 ... Zma_g16675, Zma_g17372, Zma_g2095, Zma_g21593, Zma_g4442, Zma_g4443
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.1596, evm.TU.LG06.1835, evm.TU.LG11.1195 ... evm.TU.LG16.656, evm.TU.LG21.1162
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g16880, gene.Posoc06g00370
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_12_RagTag.388, evm.TU.Scaffold_13_RagTag.690 ... evm.TU.Scaffold_4_RagTag.1609
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-24356, nbisL1-mrna-24446, nbisL1-mrna-26130 ... nbisL1-mrna-30363
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1264, nbisL1-mrna-3431, nbisL1-mrna-4744
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-16075, nbisL1-mrna-19654, nbisL1-mrna-4429
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.882, evm.TU.utg000015l.395 ... evm.TU.utg000027l.337
Rhizophoraceae	Kandelia obovata	3	Maker00001213, Maker00015257, Maker00017984
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2169, nbisL1-mrna-4315, nbisL1-mrna-5649
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-11873, nbisL1-mrna-15102, nbisL1-mrna-9560
Salicaceae	Populus euphratica	6	populus_peu03779, populus_peu06260, populus_peu06261 ... populus_peu20095, populus_peu34620, populus_peu35468
Solanaceae	Lycium barbarum	3	gene-LOC132600395, gene-LOC132621654, gene-LOC132640018
Solanaceae	Solanum chilense	3	SOLCI005954700, SOLCI006198000, SOLCI006407700
Solanaceae	Solanum pennellii	3	gene-LOC107004687, gene-LOC107008730, gene-LOC107020561
Tamaricaceae	Reaumuria soongarica	1	STRG.32545_chr09_+
Tamaricaceae	Tamarix chinensis	2	TC02G1236, TC08G1935
Zosteraceae	Zostera marina	2	Zosma01g04510.v3.1, Zosma06g28830.v3.1