Basic Information
Locus ID:
Oco06G001300
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 1180895 | 1197014 | - | Oco06G001300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 26,119.61 Da | 41.14 | 85.76 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 75 | 5.65783E-44 | IPR033896 |
| Pfam | PF01486 | K-box region | 83 | 171 | 3.2E-23 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 3.7E-27 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 83 | 6.8E-33 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 93 | 2.0E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 9.8E-41 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.734966 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 176 | 13.268114 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 5.5E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 5.5E-31 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 5.5E-31 | IPR002100 |
| Coils | Coil | Coil | 142 | 169 | - | - |
| Coils | Coil | Coil | 79 | 113 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45660.2 | - | 0 |
| RefSeq | NP_001388956.1 | mADS-box transcription factor 50 [Oryza sativa Japonica Group] | 0 |
| Q9XJ60 | MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS50 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1DE74 | MADS-box protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_005495 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology