Basic Information
Locus ID:
Oco06G000410
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 340611 | 344442 | + | Oco06G000410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 57,368.14 Da | 64.82 | 63.07 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 445 | 485 | 1.21399E-18 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 443 | 490 | 2.1E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 445 | 491 | 1.63E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 433 | 496 | 9.3E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 446 | 485 | 10.586141 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 245 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040378748.1 | uncharacterized protein LOC102707477 [Oryza brachyantha] | 0 |
| TrEMBL | A0A6G1F7C7 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_012155 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology