Basic Information
Locus ID:
Oco05G029570
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 33251525 | 33258664 | + | Oco05G029570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 80,919.95 Da | 42.67 | 71.88 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 457 | 738 | 1.13659E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 535 | 571 | 8.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 619 | 655 | 0.003 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 485 | 0.018 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.5E-8 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 705 | 738 | 0.083 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 496 | 527 | 2.5E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 456 | 738 | 1.28E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 373 | 582 | 6.1E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 583 | 738 | 2.3E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 446 | 485 | 0.0092 | IPR001680 |
| SMART | SM00320 | WD40_4 | 531 | 571 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 616 | 655 | 4.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 699 | 738 | 0.008 | IPR001680 |
| SMART | SM00320 | WD40_4 | 488 | 527 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 658 | 697 | 2.6 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 4.7E-4 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 706 | 738 | 11.233774 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.657039 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 495 | 527 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 488 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 495 | 527 | 12.209223 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 538 | 580 | 10.107432 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 706 | 738 | 11.878597 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 514 | 528 | 7.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 472 | 486 | 7.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 725 | 738 | 7.9E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 358 | - | - |
| Coils | Coil | Coil | 81 | 101 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_015630804.1 | transcriptional corepressor LEUNIG_HOMOLOG [Oryza sativa Japonica Group] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DZH8 | LisH domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_021678 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology