Basic Information
Locus ID:
Oco05G028540
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Epidermal growth factor-like domain.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 32462670 | 32470151 | - | Oco05G028540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 83,048.44 Da | 45.78 | 84.20 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 487 | 590 | 3.7E-15 | IPR001245 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 279 | 336 | 2.8E-9 | IPR025287 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 487 | 673 | 2.81E-29 | IPR011009 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 375 | 468 | 7.2E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 469 | 672 | 2.0E-27 | - |
| SMART | SM00220 | serkin_6 | 395 | 669 | 0.0049 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 412 | 740 | 14.379238 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 557 | 569 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21240.2 | - | 0 |
| RefSeq | XP_015633307.1 | wall-associated receptor kinase 4 [Oryza sativa Japonica Group] | 0 |
| Q9LMP1 | Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1 | 0 | |
| TrEMBL | Q10AU5 | Calcium binding EGF domain containing protein, expressed OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os03g62430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH01.3275, BH01.3663, CH01.3846, CH01.3847, CH02.1873 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0531690.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_059598, gene-QYE76_060264 |
| Poaceae | Oryza coarctata | 3 | Oco01G010200, Oco05G028540, Oco06G029580 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g62430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G320700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105226, Pt_Chr0106279 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G818100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG052310, gene_TRIDC5BG078330 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G347600.1, TraesCS5B02G526000.1 ... |