Basic Information
Locus ID:
Oco05G026950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 31216380 | 31220084 | - | Oco05G026950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 57,965.14 Da | 60.76 | 59.04 | -1.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 473 | 504 | 1.1E-7 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 375 | 457 | 7.0E-17 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 375 | 457 | 4.2E-22 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 224 | - | - |
| Coils | Coil | Coil | 364 | 406 | - | - |
| Coils | Coil | Coil | 305 | 325 | - | - |
| Coils | Coil | Coil | 409 | 438 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_015628069.1 | DNA ligase 1 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A0E0KKL2 | PAPA-1 domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology