Basic Information
Locus ID:
Oco05G026740
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 31064664 | 31067975 | - | Oco05G026740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 30,476.58 Da | 53.91 | 84.01 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 3 | 68 | 6.17771E-17 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 71 | 2.8E-14 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 75 | 3.68E-19 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 102 | 6.8E-19 | - |
| SMART | SM00213 | ubq_7 | 1 | 70 | 2.1E-13 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 74 | 18.388535 | IPR000626 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052150038.1 | uncharacterized protein LOC127768492 [Oryza glaberrima] | 0 |
| TrEMBL | A0A0D9ZER8 | Ubiquitin-like domain-containing protein OS=Oryza glumipatula OX=40148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.307, BH01.416, CH01.272 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0256580 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0523990.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_060920, gene-QYE76_060921, gene-QYE76_060922 |
| Poaceae | Oryza coarctata | 2 | Oco05G026740, Oco06G027730 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g53100.1, LOC_Os03g59370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G040500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105695 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G734600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG066530, gene_TRIDC5BG071540 |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G464200.1, TraesCS5B02G475600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb061840_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16537 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2528 |