Basic Information
Locus ID:
Oco05G023490
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 28111883 | 28121614 | + | Oco05G023490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 149,978.69 Da | 45.16 | 72.70 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 1001 | 1040 | 8.48301E-17 | - |
| CDD | cd04301 | NAT_SF | 1195 | 1256 | 1.28332E-4 | - |
| Pfam | PF00628 | PHD-finger | 1001 | 1043 | 1.4E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 922 | 962 | 2.1E-13 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1187 | 1276 | 2.41E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 984 | 1042 | 1.15E-13 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 1171 | 1289 | 3.3E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 989 | 1062 | 3.9E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 1000 | 1041 | 5.6E-12 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1042 | 1101 | 16.0 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1135 | 1293 | 10.521357 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 998 | 1043 | 10.0863 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1001 | 1040 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 583 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 584 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 634 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 671 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 830 | 850 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 712 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 774 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 709 | - | - |
| Coils | Coil | Coil | 805 | 839 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_052147420.1 | uncharacterized protein LOC127766417 [Oryza glaberrima] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0KIZ5 | PHD-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology