Basic Information
Locus ID:
Oco05G022400
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 27107674 | 27109225 | + | Oco05G022400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 49,555.10 Da | 50.24 | 90.50 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 92 | 125 | 5.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 89 | 126 | 1.15E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 92 | 127 | 1.2E-7 | - |
| SMART | SM00256 | fbox_2 | 93 | 133 | 0.0015 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 80 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015629377.1 | uncharacterized protein LOC4333977 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A6G1DE02 | F-box domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_001566 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000350 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.744, CH01.903 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0263140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0339180.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005203, gene-QYE76_027619, gene-QYE76_062197 |
| Poaceae | Oryza coarctata | 2 | Oco05G022400, Oco06G023290 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g51760.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G095900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203958 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G006380, Chr05G003980, Chr05G008140, Chr06G010230 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G098800, Tel5E01G124400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG040110, gene_TRIDC4BG009030 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G256400.1.cds1, TraesCS4B02G058300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb055960_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14934, nbis-gene-16019 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2891, Zma_g573 |