Basic Information
Locus ID:
Oco05G021700
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 26275158 | 26277373 | + | Oco05G021700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 44,331.74 Da | 59.46 | 77.08 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 161 | 183 | 1.0E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 231 | 266 | 7.06E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 154 | 185 | 1.44E-5 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 196 | 231 | 8.6E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 153 | 187 | 7.0E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 232 | 266 | 3.0E-8 | - |
| SMART | SM00547 | zf_4 | 207 | 229 | 0.016 | IPR001876 |
| SMART | SM00547 | zf_4 | 238 | 262 | 0.06 | IPR001876 |
| SMART | SM00547 | zf_4 | 163 | 187 | 0.0036 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 161 | 190 | 8.557999 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 236 | 265 | 9.167777 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 240 | 259 | - | IPR001876 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_015632879.1 | zinc finger protein VAR3, chloroplastic [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A0E0KI64 | Zinc finger protein VAR3, chloroplastic OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology