Basic Information
Locus ID:
Oco05G021460
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 26031245 | 26039226 | + | Oco05G021460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 29,052.04 Da | 46.53 | 60.00 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 144 | 172 | 2.5E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 218 | 240 | 1.6E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 183 | 211 | 8.9E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 179 | 212 | 7.69E-8 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 136 | 173 | 1.02E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 214 | 246 | 3.7E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 135 | 174 | 5.4E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 175 | 213 | 1.1E-14 | - |
| SMART | SM00547 | zf_4 | 185 | 209 | 3.8E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 146 | 170 | 6.5E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 218 | 242 | 1.4E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 183 | 212 | 10.048569 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 144 | 173 | 9.596881 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 216 | 245 | 9.066148 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 148 | 167 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 187 | 206 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 220 | 239 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_052148888.1 | zinc finger protein VAR3, chloroplastic-like [Oryza glaberrima] | 0 |
| TrEMBL | I1PEW5 | Zinc finger protein VAR3, chloroplastic OS=Oryza glaberrima OX=4538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology