Basic Information
Locus ID:
Oco05G020960
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 25467994 | 25472424 | - | Oco05G020960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 52,715.39 Da | 44.90 | 86.38 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 219 | 247 | 0.091 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 315 | 338 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 176 | 3.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 102 | 133 | 2.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 49 | 365 | 4.28E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 187 | 377 | 8.0E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 39 | 185 | 2.2E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 94 | 133 | 8.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 176 | 8.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 247 | 6.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 298 | 339 | 2.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 143 | 178 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 318 | 341 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 101 | 136 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 143 | 178 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 101 | 142 | 13.282162 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 234 | 248 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 120 | 134 | 2.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 163 | 177 | 2.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 234 | 248 | 2.0E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 453 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27640.2 | - | 0 |
| RefSeq | XP_052149061.1 | uncharacterized protein LOC127767688 [Oryza glaberrima] | 0 |
| Q5ZJW8 | Denticleless protein homolog OS=Gallus gallus OX=9031 GN=DTL PE=2 SV=1 | 0 | |
| TrEMBL | I1PEM2 | WD_REPEATS_REGION domain-containing protein OS=Oryza glaberrima OX=4538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40392 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7226 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008880 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g088900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18296, Sbi_jg36681 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4635 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017454 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl23445, Sgl23563, Sgl28571, Sgl28746, Sgl45436, Sgl50221 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000030889, gene:ENSEOMG00000042814 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0023360 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30022940 |
| Apiaceae | Apium graveolens | 2 | Ag7G01965, Ag9G00455 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G007750 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706899 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.369.V1.1, AsparagusV1_03.922.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G18872 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G27640.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004025m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16770.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g067860.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1952 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g08660 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0045s00003.v1.0, Dusal.0045s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g00430 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10326, nbisL1-mrna-6853 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.306 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024166 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22455 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.943, BH01.1081, CH01.1126 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0220270, gene-QOZ80_3BG0265410 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0335740.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062500, gene-QYE76_062703 |
| Poaceae | Oryza coarctata | 2 | Oco05G020960, Oco06G021730 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g49200.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G116000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104829, Pt_Chr0104886 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G007690, Chr04G026410, Chr07G025380, Chr12G029710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G070500, Tel6E01G666100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG042900, gene_TRIDC4BG006070 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G276500.1, TraesCS4B02G037200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb015370_P001, Zm00001eb053910_P001 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3017 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.498, evm.TU.LG09.1742 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g03320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1919 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-2400, nbisL1-mrna-2576 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17416 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3088 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.65 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001685 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12036 |
| Salicaceae | Populus euphratica | 2 | populus_peu01077, populus_peu01082 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622194, gene-LOC132623745 |
| Solanaceae | Solanum chilense | 1 | SOLCI002260900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009248 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13839 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3579 |
| Zosteraceae | Zostera marina | 2 | Zosma06g06800.v3.1, Zosma07g04720.v3.1 |