Basic Information
Locus ID:
Oco05G018850
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 22779772 | 22784697 | - | Oco05G018850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 69,437.35 Da | 45.00 | 95.38 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 122 | 4.76068E-48 | - |
| Pfam | PF00651 | BTB/POZ domain | 28 | 114 | 2.2E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 212 | 467 | 1.6E-93 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 17 | 114 | 3.3E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 14 | 132 | 1.2E-13 | IPR011333 |
| SMART | SM00225 | BTB_4 | 29 | 125 | 1.1E-5 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 12.577702 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 212 | 491 | 92.101288 | IPR027356 |
| Coils | Coil | Coil | 532 | 566 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_052149010.1 | BTB/POZ domain-containing protein At1g30440-like [Oryza glaberrima] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1CR98 | NPH3 domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_018290 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology