Basic Information
Locus ID:
Oco05G018840
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
C-terminus of AA_permease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 22774841 | 22776155 | - | Oco05G018840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 39,865.32 Da | 27.76 | 106.57 | 0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13520 | Amino acid permease | 2 | 169 | 4.5E-12 | IPR002293 |
| Pfam | PF13906 | C-terminus of AA_permease | 294 | 344 | 9.3E-17 | IPR029485 |
| Gene3D | G3DSA:1.20.1740.10 | Amino acid/polyamine transporter I | 1 | 357 | 1.5E-41 | - |
| PIRSF | PIRSF006060 | AA_transporter | 2 | 171 | 5.4E-23 | - |
| PIRSF | PIRSF006060 | AA_transporter | 161 | 357 | 0.0025 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21120.2 | - | 0 |
| RefSeq | XP_006650336.2 | cationic amino acid transporter 1-like [Oryza brachyantha] | 0 |
| Q84MA5 | Cationic amino acid transporter 1 OS=Arabidopsis thaliana OX=3702 GN=CAT1 PE=1 SV=1 | 0 | |
| TrEMBL | J3LR29 | AA_permease_C domain-containing protein OS=Oryza brachyantha OX=4533 GN=102715466 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology