Basic Information
Locus ID:
Oco05G016530
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
WRKY4
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 17651478 | 17656948 | - | Oco05G016530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 54,259.71 Da | 59.06 | 60.71 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 406 | 441 | 1.3E-11 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 294 | 315 | 1.1E-6 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 127 | 183 | 6.9E-24 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 124 | 185 | 9.94E-25 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 285 | 315 | 2.75E-9 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 406 | 444 | 5.36E-13 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 280 | 323 | 1.9E-14 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 397 | 445 | 9.9E-15 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 112 | 186 | 1.5E-26 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 293 | 443 | 1.6E-28 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 126 | 184 | 2.6E-32 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 288 | 444 | 25.579742 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 127 | 185 | 23.24983 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 277 | - | - |
| Coils | Coil | Coil | 6 | 26 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.2 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_052146685.1 | probable WRKY transcription factor 4 isoform X1 [Oryza glaberrima] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0D9Z9E6 | WRKY domain-containing protein OS=Oryza glumipatula OX=40148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology