Basic Information
Locus ID:
Oco05G016270
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
mediator of RNA polymerase II transcription subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 17246560 | 17251764 | + | Oco05G016270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 45,666.77 Da | 57.80 | 60.69 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G03070.1 | mediator subunit 8. Encodes a subunit of the Mediator complex. Regulates plant defense and flowering. | 0 |
| RefSeq | XP_015630849.1 | mediator of RNA polymerase II transcription subunit 8 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q4V3C1 | Mediator of RNA polymerase II transcription subunit 8 OS=Arabidopsis thaliana OX=3702 GN=MED8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1EBX0 | Mediator of RNA polymerase II transcription subunit 8 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_020531 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25106 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5517 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028608 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26810, Sbi_jg33760 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8448 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011696, GOSA_00011697 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl73548, Sgl73561, Sgl77069 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005999, gene:ENSEOMG00000007387 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007660, CQ.Regalona.r1.9BG0007720 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30131360 |
| Apiaceae | Apium graveolens | 1 | Ag1G01883 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G009800 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707058 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3540.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G19356 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G03070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004003m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g14070.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g065720.2N, BniB04g014290.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1010 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1056 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06100 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2511s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g11950 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3285 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.698 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005877, Pov_00011653 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G30132, Lb6G30133 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.630, BH05.682, CH05.787 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0526240, gene-QOZ80_6BG0480160 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_007061 |
| Poaceae | Oryza coarctata | 2 | Oco05G016270, Oco06G016900 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g31010.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G271300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700146, Pt_Chr0700327 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G006250, Chr11G013180 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G577700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG052900, gene_TRIDC5BG057030 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G361500.2, TraesCS5B02G364100.4 ... |
| Poaceae | Zea mays | 1 | Zm00001eb320420_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50734 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29895 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.224, evm.TU.LG24.470 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g15470 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1678 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19844 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6394 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13603 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.57 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011667 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13257 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12368 |
| Salicaceae | Populus euphratica | 1 | populus_peu19822 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633597 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014261 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21232_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1875 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19600.v3.1 |