Basic Information
Locus ID:
Oco05G016260
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ICP0-binding domain of Ubiquitin-specific protease 7
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 17225226 | 17235123 | + | Oco05G016260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 66,619.78 Da | 52.89 | 86.06 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 132 | 212 | 1.7E-8 | IPR024729 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 279 | 448 | 1.1E-16 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 258 | 495 | 1.19E-36 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 501 | 573 | 1.7E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 254 | 342 | 2.0E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 346 | 493 | 1.3E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 129 | 203 | 2.6E-14 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 276 | 576 | 14.266167 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 389 | 401 | - | IPR008266 |
| Coils | Coil | Coil | 236 | 256 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_015629545.1 | U-box domain-containing protein 57 [Oryza sativa Japonica Group] | 0 |
| Q0DR28 | U-box domain-containing protein 57 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB57 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0KF70 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026965 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.3271, AH01.3272, BH01.3661, CH01.3844 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0462010 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0185430.1, HORVU.MOREX.r3.4HG0347270.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066275 |
| Poaceae | Oryza coarctata | 2 | Oco05G016260, Oco06G016910 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g31000.1, LOC_Os03g31044.2, LOC_Os03g31070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G320400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302778, Pt_Chr0704227 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr04G013600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G154600 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG056450, gene_TRIDC2BG059420 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G391300.1, TraesCS2B02G409700.1 ... |