Basic Information
Locus ID:
Oco05G016060
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
beta-N-acetylhexosaminidase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 16839208 | 16840150 | + | Oco05G016060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 27,866.53 Da | 32.41 | 49.66 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 13 | 52 | 2.88219E-15 | - |
| CDD | cd00325 | chitinase_GH19 | 72 | 254 | 1.85018E-69 | - |
| Pfam | PF00182 | Chitinase class I | 126 | 254 | 1.6E-59 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 14 | 51 | 2.7E-11 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 71 | 122 | 5.4E-21 | IPR000726 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 14 | 54 | 1.57E-10 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 68 | 261 | 7.31E-71 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 221 | 260 | 3.0E-9 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 130 | 180 | 2.2E-44 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 71 | 122 | 6.7E-16 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 12 | 55 | 1.0E-13 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 181 | 220 | 2.2E-44 | - |
| SMART | SM00270 | ChitinBD_3 | 14 | 51 | 1.9E-15 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 122 | 261 | 2.9E-51 | IPR016283 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 124 | 3.8E-35 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 12 | 53 | 10.676991 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 89 | 111 | - | IPR000726 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 184 | 194 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 24 | 43 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 22 | 30 | 1.8E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 30 | 37 | 1.8E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 37 | 44 | 1.8E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_015629397.1 | chitinase 12 [Oryza sativa Japonica Group] | 0 |
| P25765 | Chitinase 12 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht12 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0KF33 | chitinase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology